Package: dcmle 0.4-2
Peter Solymos
dcmle: Hierarchical Models Made Easy with Data Cloning
S4 classes around infrastructure provided by the 'coda' and 'dclone' packages to make package development easy as a breeze with data cloning for hierarchical models.
Authors:
dcmle_0.4-2.tar.gz
dcmle_0.4-2.zip(r-4.7)dcmle_0.4-2.zip(r-4.6)dcmle_0.4-2.zip(r-4.5)
dcmle_0.4-2.tgz(r-4.6-any)dcmle_0.4-2.tgz(r-4.5-any)
dcmle_0.4-2.tar.gz(r-4.7-any)dcmle_0.4-2.tar.gz(r-4.6-any)
dcmle_0.4-2.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
dcmle/json (API)
| # Install 'dcmle' in R: |
| install.packages('dcmle', repos = c('https://datacloning.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/datacloning/dcmle/issues
Uses libs:
- jags– Just Another Gibbs Sampler for Bayesian MCMC - binary JAGS is Just Another Gibbs Sampler. It is a program for analysis of Bayesian hierarchical models using Markov Chain Monte Carlo (MCMC) simulation not wholly unlike BUGS. JAGS was written with three aims in mind: * To have an engine for the BUGS language that runs on Unix * To be extensible, allowing users to write their own functions, distributions and samplers. * To be a plaftorm for experimentation with ideas in Bayesian modelling This package contains the 'jags' binary as well as the associated shared library modules loaded by the binary.
- c++– GNU Standard C++ Library v3
Last updated from:7f6f88fa4e. Checks:9 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| linux-devel-x86_64 | OK | 278 | ||
| source / vignettes | OK | 214 | ||
| linux-release-x86_64 | OK | 290 | ||
| macos-release-arm64 | OK | 180 | ||
| macos-oldrel-arm64 | OK | 194 | ||
| windows-devel | OK | 236 | ||
| windows-release | OK | 325 | ||
| windows-oldrel | OK | 236 | ||
| wasm-release | OK | 157 |
Exports:acfplotautocorr.diagchanameschisq.diagcoefconfintcrosscorrcrosscorr.plotcumuplotdcdiagdcmledcsddctabledensityplotdensplotendfrequencygelman.diaggelman.plotgeweke.diagheidel.diaglambdamax.diagmakeDcFitmakeGsFitmcparnchainnclonesniternvarpairsplotqqmathquantileraftery.diagshowstackstartstrsummarythintimetraceplotupdatevarnamesvcovwindowxyplot
Dependencies:abindbackportsBHbootcallrcheckmateclicodacpp11dclonedescdistributionalfarvergenericsggplot2gluegridExtragtableinlineisobandlabelinglatticelifecycleloomagrittrMatrixmatrixStatsnumDerivpillarpkgbuildpkgconfigposteriorprocessxpsQuickJSRR2OpenBUGSR6RColorBrewerRcppRcppEigenRcppParallelrjagsrlangrstanS7scalesStanHeaderstensorAtibbleutf8vctrsviridisLitewithr
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Hierarchical Models Made Easy with Data Cloning | dcmle-package |
| coda package related generic functions | chanames varnames |
| Class '"codaMCMC"' | acfplot,codaMCMC-method as.array,codaMCMC-method as.matrix,codaMCMC-method as.mcmc.list,codaMCMC-method autocorr.diag,codaMCMC-method chanames,codaMCMC-method chisq.diag,codaMCMC-method codaMCMC-class coef,codaMCMC-method coerce,codaMCMC,dcmle-method coerce,codaMCMC,MCMClist-method coerce,MCMClist,codaMCMC-method confint,codaMCMC-method crosscorr,codaMCMC-method crosscorr.plot,codaMCMC-method cumuplot,codaMCMC-method dcdiag,codaMCMC-method dcsd,codaMCMC-method dctable,codaMCMC-method densityplot,codaMCMC-method densplot,codaMCMC-method end,codaMCMC-method frequency,codaMCMC-method gelman.diag,codaMCMC-method gelman.plot,codaMCMC-method geweke.diag,codaMCMC-method head,codaMCMC-method heidel.diag,codaMCMC-method lambdamax.diag,codaMCMC-method mcpar,codaMCMC-method nchain,codaMCMC-method nclones,codaMCMC-method niter,codaMCMC-method nvar,codaMCMC-method pairs,codaMCMC-method plot,codaMCMC,missing-method qqmath,codaMCMC-method quantile,codaMCMC-method raftery.diag,codaMCMC-method show,codaMCMC-method stack,codaMCMC-method start,codaMCMC-method summary,codaMCMC-method tail,codaMCMC-method thin,codaMCMC-method time,codaMCMC-method traceplot,codaMCMC-method varnames,codaMCMC-method vcov,codaMCMC-method window,codaMCMC-method xyplot,codaMCMC-method [,codaMCMC-method [[,codaMCMC-method |
| Generic after similar coda function | crosscorr.plot |
| Generic after similar coda function | cumuplot |
| Class '"custommodel"' | custommodel-class |
| Class '"dcArgs"' | dcArgs-class |
| Class '"dcCodaMCMC"' | coerce,dcCodaMCMC,dcmle-method coerce,dcCodaMCMC,MCMClist-method coerce,MCMClist,dcCodaMCMC-method confint,dcCodaMCMC-method dcCodaMCMC-class dcdiag,dcCodaMCMC-method dctable,dcCodaMCMC-method nclones,dcCodaMCMC-method str,dcCodaMCMC-method summary,dcCodaMCMC-method [,codaMCMC,ANY,ANY,ANY-method [,dcCodaMCMC,ANY,ANY,ANY-method [,dcCodaMCMC-method [,dcmle,ANY,ANY,ANY-method [[,dcCodaMCMC-method |
| Class '"dcdiag"' | dcdiag-class |
| Class '"dcDiag"' | dcDiag-class |
| Class '"dcFit"' | dcFit-class show,dcFit-method |
| Class '"dcFunction"' | dcFunction-class |
| Class '"dcInits"' | dcInits-class |
| Asymptotic maximum likelihood estimation with data cloning | dcmle |
| Class '"dcmle"' | acfplot,dcmle-method as.array,dcmle-method as.matrix,dcmle-method as.mcmc.list,dcmle-method autocorr.diag,dcmle-method chanames,dcmle-method chisq.diag,dcmle-method coef,dcmle-method coerce,dcmle,codaMCMC-method coerce,dcmle,dcCodaMCMC-method coerce,dcmle,MCMClist-method coerce,MCMClist,dcmle-method confint,dcmle-method crosscorr,dcmle-method crosscorr.plot,dcmle-method cumuplot,dcmle-method dcdiag,dcmle-method dcmle-class dcsd,dcmle-method dctable,dcmle-method densityplot,dcmle-method densplot,dcmle-method end,dcmle-method frequency,dcmle-method gelman.diag,dcmle-method gelman.plot,dcmle-method geweke.diag,dcmle-method head,dcmle-method heidel.diag,dcmle-method lambdamax.diag,dcmle-method mcpar,dcmle-method nchain,dcmle-method nclones,dcmle-method niter,dcmle-method nvar,dcmle-method pairs,dcmle-method plot,dcmle,missing-method qqmath,dcmle-method quantile,dcmle-method raftery.diag,dcmle-method show,dcmle-method stack,dcmle-method start,dcmle-method str,dcmle-method summary,dcmle-method tail,dcmle-method thin,dcmle-method time,dcmle-method traceplot,dcmle-method update,dcmle-method varnames,dcmle-method vcov,dcmle-method window,dcmle-method xyplot,dcmle-method [,dcmle-method [[,dcmle-method |
| Class '"dcModel"' | dcModel-class |
| Class '"dcParams"' | dcParams-class |
| Class '"dctable"' | dctable-class |
| Class '"dcTable"' | dcTable-class |
| Diagnostic functions set as generic | gelman.diag gelman.plot geweke.diag heidel.diag raftery.diag |
| Class '"gsFit"' | gsFit-class show,gsFit-method |
| Data object creators | makeDcFit makeGsFit |
| Class '"mcmc"' | mcmc-class |
| Class '"mcmc.list"' | mcmc.list-class |
| Class '"mcmc.list.dc"' | mcmc.list.dc-class |
| Class '"MCMClist"' | acfplot,MCMClist-method autocorr.diag,MCMClist-method chanames,MCMClist-method chisq.diag,MCMClist-method confint,MCMClist-method crosscorr,MCMClist-method crosscorr.plot,MCMClist-method cumuplot,MCMClist-method densityplot,MCMClist-method densplot,MCMClist-method frequency,MCMClist-method gelman.diag,MCMClist-method gelman.plot,MCMClist-method geweke.diag,MCMClist-method heidel.diag,MCMClist-method lambdamax.diag,MCMClist-method MCMClist-class mcpar,MCMClist-method nchain,MCMClist-method niter,MCMClist-method nvar,MCMClist-method pairs,MCMClist-method plot,MCMClist,missing-method qqmath,MCMClist-method quantile,MCMClist-method raftery.diag,MCMClist-method thin,MCMClist-method traceplot,MCMClist-method varnames,MCMClist-method xyplot,MCMClist-method |
| Class '"nClones"' | nClones-class |
| Class '"summary.codaMCMC"' | show,summary.codaMCMC-method summary.codaMCMC-class |
| Class '"summary.dcCodaMCMC"' | show,summary.dcCodaMCMC-method summary.dcCodaMCMC-class |
| Class '"summary.dcmle"' | show,summary.dcmle-method summary.dcmle-class |
